Publications By Year

Publications by Authors

Recent Publications

Contact Us

 

Mailing Address:
The Robert H. Smith Institute of
Plant Sciences and Genetics
in Agriculture
Herzl 229, Rehovot 7610001, Israel

Administrator: 
Neomi Maimon 
Tel: 972-8-948-9251,
Fax: 972-8-948-9899,
E-mail: neomim@savion.huji.ac.il

Secretary of teaching program:
Ms. Iris Izenshtadt
Tel: 972-8-9489333
E-mail: Iris.Izenshtadt@mail.huji.ac.il

Director: 
Prof. Naomi Ori
Tel: 972-8-948-9605
E-mail: naomi.ori@mail.huji.ac.il

 

Publications

2016
Kleinman, Z. ; Ben-Ami, G. ; Rubin, B. . From Sensitivity To Resistance - Factors Affecting The Response Of Conyza Spp. To Glyphosate. Pest management science 2016, 72, 1681-1688. Publisher's VersionAbstract
BACKGROUND: Conyza bonariensis and C. canadensis are troublesome weeds, particularly in fields with minimum tillage, on roadsides and in perennial crops. The distribution of these difficult-to-control species is further increased by the spread of glyphosate-resistant populations. A preliminary investigation has demonstrated the existence of various degrees of glyphosate tolerance/resistance in these populations, underscoring the need to examine the relationship between glyphosate efficacy and plant growth conditions. RESULTS: In populations exposed to glyphosate at different temperatures, glyphosate tolerance increased linearly as the temperature was increased, whereas when grown under the same temperatures, they largely responded similarly to the herbicide. Furthermore, the sensitivity of plants to glyphosate decreased significantly with plant age and increased following temporal exposure to shading. Dose-response studies confirmed the glyphosate resistance of four C. bonariensis populations that were 8-30 times more resistant to glyphosate than the most glyphosate-sensitive population. These populations retained their characteristic glyphosate resistance even under unfavourable growth conditions. CONCLUSION: These findings indicate that the effect of glyphosate on both Conyza species is strongly linked to growing conditions. This has great importance for our understanding of glyphosate resistance and for control of these weeds in agricultural systems. © 2015 Society of Chemical Industry. © 2015 Society of Chemical Industry.
Cochavi, A. ; Rubin, B. ; Achdari, G. ; Eizenberg, H. . Thermal Time Model For Egyptian Broomrape (Phelipanche Aegyptiaca) Parasitism Dynamics In Carrot (Daucus Carota L.): Field Validation. Frontiers in Plant Science 2016, 7. Publisher's VersionAbstract
Carrot, a highly profitable crop in Israel, is severely damaged by Phelipanche aegyptiaca parasitism. Herbicides can effectively control the parasite and prevent damage, but for optimal results, knowledge about the soil–subsurface phenological stage of the parasite is essential. Parasitism dynamics models have been successfully developed for the parasites P. aegyptiaca, Orobanche cumana, and Orobanche minor in the summer crops, tomato, sunflower, and red clover, respectively. However, these models, which are based on a linear relationship between thermal time and the parasitism dynamics, may not necessarily be directly applicable to the P. aegyptiaca–carrot system. The objective of the current study was to develop a thermal time model to predict the effect of P. aegyptiaca parasitism dynamics on carrot growth. For development and validation of the models, data was collected from a temperature-controlled growth experiment and from 13 plots naturally infested with P. aegyptiaca in commercial carrot fields. Our results revealed that P. aegyptiaca development is related to soil temperature. Moreover, unlike P. aegyptiaca parasitism in sunflower and tomato, which could be predicted both a linear model, P. aegyptiaca parasitism dynamics on carrot roots required a nonlinear model, due to the wider range of growth temperatures of both the carrot and the parasite. Hence, two different nonlinear models were developed for optimizing the prediction of P. aegyptiaca parasitism dynamics. Both models, a beta function model and combined model composed of a beta function and a sigmoid curve, were able to predict first P. aegyptiaca attachment. However, overall P. aegyptiaca dynamics was described more accurately by the combined model (RMSE = 14.58 and 10.79, respectively). The results of this study will complement previous studies on P. aegyptiaca management by herbicides to facilitate optimal carrot growth and handling in fields infested with P. aegyptiaca. © 2016 Cochavi, Rubin, Achdari and Eizenberg.
Ghanim, M. ; Czosnek, H. . Interactions Between The Whitefly Bemisia Tabaci And Begomoviruses: Biological And Genomic Perspectives; 2016; pp. 181-200. Publisher's VersionAbstract
Begomoviruses are an emerging group of plant viruses, exclusively transmitted by the whitefly Bemisia tabaci in a persistent-circulative manner. Despite the economic importance of both, very little is known about begomovirus-whitefly interactions. Specific topics of interest that have been a subject of intensive research during the last decade include the route of the virus in the insect organs and cells, the influence of the virus on the insect’s behavior and transcriptome, the proteins that mediate begomovirus translocation and the role of bacterial symbionts in this phenomenon. These topics are summarized and discussed in this chapter. © Springer International Publishing Switzerland 2016.
Czosnek, H. ; Ghanim, M. . Management Of Insect Pests To Agriculture: Lessons Learned From Deciphering Their Genome, Transcriptome And Proteome; 2016; pp. 1-290. Publisher's VersionAbstract
Thanks to the application of new technologies such as whole-genome sequencing, analysis of transcriptome and proteome of insect pest to agriculture, great progress has been made in understanding the life style, reproduction, evolution and nuisance to crops caused by insect pests such as aphids, planthoppers, and whiteflies. We believe that time has come to summarize progress and to have a glance over the horizon. In this Book experts in the field discuss novel means to increase the different kinds of resistances of plants to better limit the effects of pest, to understand and disturb the hormonal regulation of embryogenesis, molting, metamorphosis and reproduction, to determine the function of insect genes in diverse processes such as metabolism, interaction with plants, virus transmission, development, and adaptation to a changing environment. The knowledge presented here is discussed with the aim of further improving control strategies of insect pestsman";mso-hansi-theme-font:minor-bidi;mso-bidi-theme-font:minor-bidi; mso-ansi-language:NL;mso-fareast-language:NL;mso-bidi-language:AR-SA">. © Springer International Publishing Switzerland 2016.
Shalev, A. H. ; Sobol, I. ; Ghanim, M. ; Liu, S. - S. ; Czosnek, H. . The Whitefly Bemisia Tabaci Knottin-1 Gene Is Implicated In Regulating The Quantity Of Tomato Yellow Leaf Curl Virus Ingested And Transmitted By The Insect. Viruses 2016, 8. Publisher's VersionAbstract
The whitefly Bemisia tabaci is a major pest to agricultural crops. It transmits begomoviruses, such as Tomato yellow leaf curl virus (TYLCV), in a circular, persistent fashion. Transcriptome analyses revealed that B. tabaci knottin genes were responsive to various stresses. Upon ingestion of tomato begomoviruses, two of the four knottin genes were upregulated, knot-1 (with the highest expression) and knot-3. In this study, we examined the involvement of B. tabaci knottin genes in relation to TYLCV circulative transmission. Knottins were silenced by feeding whiteflies with knottin dsRNA via detached tomato leaves. Large amounts of knot-1 transcripts were present in the abdomen of whiteflies, an obligatory transit site of begomoviruses in their circulative transmission pathway; knot-1 silencing significantly depleted the abdomen from knot-1 transcripts. Knot-1 silencing led to an increase in the amounts of TYLCV ingested by the insects and transmitted to tomato test plants by several orders of magnitude. This effect was not observed following knot-3 silencing. Hence, knot-1 plays a role in restricting the quantity of virions an insect may acquire and transmit. We suggest that knot-1 protects B. tabaci against deleterious effects caused by TYLCV by limiting the amount of virus associated with the whitefly vector. © 2016 by the authors; licensee MDPI, Basel, Switzerland.
Shilo, T. ; Zygier, L. ; Rubin, B. ; Wolf, S. ; Eizenberg, H. . Mechanism Of Glyphosate Control Of Phelipanche Aegyptiaca. 2016, 244, 1095 - 1107. Publisher's VersionAbstract
Despite its total reliance on its host plant, the holoparasitePhelipanche aegyptiacasuffers from a deficiency of aromatic amino acids upon exposure to glyphosate.
Farber, M. ; Attia, Z. ; Weiss, D. . Cytokinin Activity Increases Stomatal Density And Transpiration Rate In Tomato. Journal of Experimental Botany 2016, 67, 6351 - 6362. Publisher's VersionAbstract
Previous studies on cytokinin (CK) and drought have suggested that the hormone has positive and negative effects on plant adaptation to restrictive conditions. This study examined the effect of CK on transpiration, stomatal activity, and response to drought in tomato (Solanum lycopersicum) plants. Transgenic tomato plants overexpressing the Arabidopsis thaliana CK-degrading enzyme CK oxidase/dehydrogenase 3 (CKX3) maintained higher leaf water status under drought conditions due to reduced whole-plant transpiration. The reduced transpiration could be attributed to smaller leaf area and reduced stomatal density. CKX3-overexpressing plants contained fewer and larger pavement cells and fewer stomata per leaf area than wild-type plants. In addition, wild-type leaves treated with CK exhibited enhanced transpiration and had more pavement cells and increased numbers of stomata per leaf area than untreated leaves. Manipulation of CK levels did not affect stomatal movement or abscisic acid-induced stomatal closure. Moreover, we found no correlation between stomatal aperture and the activity of the CK-induced promoter Two-Component Signaling Sensor (TCS) in guard cells. Previous studies have shown that drought reduces CK levels, and we propose this to be a mechanism of adaptation to water deficiency: the reduced CK levels suppress growth and reduce stomatal density, both of which reduce transpiration, thereby increasing tolerance to prolonged drought conditions.
Firsov, A. ; Shaloiko, L. ; Kozlov, O. ; Vinokurov, L. ; Vainstein, A. ; Dolgov, S. . Purification And Characterization Of Recombinant Supersweet Protein Thaumatin Ii From Tomato Fruit. 2016, 123, 1 - 5. Publisher's VersionAbstract
Thaumatin, a supersweet protein from the African plant katemfe (Thaumatococcus daniellii Benth.), is a promising zero-calorie sweetener for use in the food and pharmaceutical industries. Due to limited natural sources of thaumatin, its production using transgenic plants is an advantageous alternative. We report a simple protocol for purification of recombinant thaumatin II from transgenic tomato. Thaumatin was extracted from ripe tomato fruit in a low-salt buffer and purified on an SP-Sephacryl column. Recombinant thaumatin yield averaged 50 mg/kg fresh fruit. MALDI-MS analysis showed correct processing of thaumatin in tomato plants. The recombinant thaumatin was indistinguishable from the native protein in a taste test. The purified tomato-derived thaumatin had an intrinsic sweetness with a threshold value in taste tests of around 50 nM. These results demonstrate the potential of an expression system based on transgenic tomato plants for production of recombinant thaumatin for the food and pharmaceutical industries.
Roiz, L. ; Smirnoff, P. ; Lewin, I. ; Shoseyov, O. ; Schwartz, B. . Human Recombinant Rnaset2: A Potential Anti-Cancer Drug. Oncoscience 2016, 3, 71 - 84. Publisher's Version
Abraham, E. ; Nevo, Y. ; Slattegard, R. ; Attias, N. ; Sharon, S. ; Lapidot, S. ; Shoseyov, O. . Highly Hydrophobic Thermally Stable Liquid Crystalline Cellulosic Nanomaterials. ACS Sustainable Chemistry and Engineering 2016, 4, 1338 - 1346. Publisher's Version
Yaari, A. ; Schilt, Y. ; Tamburu, C. ; Raviv, U. ; Shoseyov, O. . Wet Spinning And Drawing Of Human Recombinant Collagen. ACS Biomaterials Science & EngineeringACS Biomaterials Science & Engineering 2016, 2, 349 - 360. Publisher's Version
Sanami, M. ; Sweeney, I. ; Shtein, Z. ; Meirovich, S. ; Sorushanova, A. ; Mullen, A. M. ; Miraftab, M. ; Shoseyov, O. ; O'Dowd, C. ; Pandit, A. ; et al. The Influence Of Poly(Ethylene Glycol) Ether Tetrasuccinimidyl Glutarate On The Structural, Physical, And Biological Properties Of Collagen Fibers. Journal of Biomedical Materials Research Part B: Applied BiomaterialsJournal of Biomedical Materials Research Part B: Applied BiomaterialsJ. Biomed. Mater. Res. 2016, 104, 914 - 922. Publisher's VersionAbstract
Abstract Various chemical, natural, or synthetic in origin, crosslinking methods have been proposed over the years to stabilise collagen fibers. However, an optimal method has yet to be identified. Herein, we ventured to assess the potential of 4-star poly(ethylene glycol) ether tetrasuccinimidyl glutarate, as opposed to glutaraldehyde (GTA), genipin and carbodiimide, on the structural, physical and biological properties of collagen fibers. The 4-star poly(ethylene glycol) ether tetrasuccinimidyl glutarate induced an intermedium surface smoothness, denaturation temperature and swelling. The 4-star poly(ethylene glycol) ether tetrasuccinimidyl glutarate fibers had significantly higher stress at break values than the carbodiimide fibers, but significantly lower than the GTA and genipin fibers. With respect to strain at break, no significant difference was observed among the crosslinking treatments. The 4-star poly(ethylene glycol) ether tetrasuccinimidyl glutarate fibers exhibited significantly higher cell metabolic activity and DNA concentration that all other crosslinking treatments, promoted consistently cellular elongation along the longitudinal fiber axis and by day 7 they were completely covered by cells. Collectively, this work clearly demonstrates the potential of 4-star poly(ethylene glycol) ether tetrasuccinimidyl glutarate as collagen crosslinker. ? 2015 Wiley Periodicals, Inc. J Biomed Mater Res Part B: Appl Biomater, 104B: 914?922, 2016.
Meirovitch, S. ; Shtein, Z. ; Ben-Shalom, T. ; Lapidot, S. ; Tamburu, C. ; Hu, X. ; Kluge, J. A. ; Raviv, U. ; Kaplan, D. L. ; Shoseyov, O. . Spider Silk-Cbd-Cellulose Nanocrystal Composites: Mechanism Of Assembly. International Journal of Molecular Sciences 2016, 17. Publisher's Version
Abraham, E. ; Kam, D. ; Nevo, Y. ; Slattegard, R. ; Rivkin, A. ; Lapidot, S. ; Shoseyov, O. . Highly Modified Cellulose Nanocrystals And Formation Of Epoxy-Nanocrystalline Cellulose (Cnc) Nanocomposites. ACS Applied Materials & InterfacesACS Applied Materials & Interfaces 2016, 8, 28086 - 28095. Publisher's Version
Merchuk-Ovnat, L. ; Barak, V. ; Fahima, T. ; Ordon, F. ; Lidzbarsky, G. A. ; Krugman, T. ; Saranga, Y. . Ancestral Qtl Alleles From Wild Emmer Wheat Improve Drought Resistance And Productivity In Modern Wheat Cultivars. 2016, 7, 452. Publisher's VersionAbstract
Wild emmer wheat (Triticum turgidum ssp. dicoccoides) is considered a promising source for improving stress resistances in domesticated wheat. Here we explored the potential of selected quantitative trait loci (QTLs) from wild emmer wheat, introgressed via marker-assisted selection, to enhance drought resistance in elite durum (T. turgidum ssp. durum) and bread (T. aestivum) wheat cultivars. The resultant near-isogenic lines (BC3F3 and BC3F4) were genotyped using SNP array to confirm the introgressed genomic regions and evaluated in two consecutive years under well-watered (690–710 mm) and water-limited (290–320 mm) conditions. Three of the introgressed QTLs were successfully validated, two in the background of durum wheat cv. Uzan (on chromosomes 1BL and 2BS), and one in the background of bread wheat cvs. Bar Nir and Zahir (chromosome 7AS). In most cases, the QTL x environment interaction was validated in terms of improved grain yield and biomass—specifically under drought (7AS QTL in cv. Bar Nir background), under both treatments (2BS QTL), and a greater stability across treatments (1BL QTL). The results provide a first demonstration that introgression of wild emmer QTL alleles can enhance productivity and yield stability across environments in domesticated wheat, thereby enriching the modern gene pool with essential diversity for the improvement of drought resistance.
Merchuk-Ovnat, L. ; Fahima, T. ; Krugman, T. ; Saranga, Y. . Ancestral Qtl Alleles From Wild Emmer Wheat Improve Grain Yield, Biomass And Photosynthesis Across Enviroinments In Modern Wheat. Special Issue: Water-Use Efficiency in Plants 2016, 251, 23 - 34. Publisher's VersionAbstract
Wild emmer wheat (Triticum turgidum ssp. dicoccoides) is considered a promising source for improving drought resistance in domesticated wheat. Nevertheless, wild germplasm has not been widely used in wheat breeding for abiotic stress resilience. In the current study, a near isogenic line NIL-7A-B-2, introgressed with a drought-related QTL from wild emmer wheat on chromosome 7A, and its recurrent parent, bread wheat cv. BarNir, were investigated under four environments across 2 years—water-limited and well-watered conditions in a rain-protected screen-house (Year 1) and two commercial open field plots under ample precipitation (Year 2). NIL-7A-B-2 exhibited an advantage over BarNir in grain yield and biomass production under most environments. Further physiological analyses suggested that enhanced photosynthetic capacity and photochemistry combined with higher flag leaf area are among the factors underlying the improved productivity of NIL-7A-B-2. These were coupled with improved sink capacity in NIL-7A-B-2, manifested by greater yield components than its parental line. This study provides further support for our previous findings that introgression of wild emmer QTL alleles, using marker assisted selection, can enhance grain yield and biomass production across environments in domesticated wheat, thereby enriching the modern gene pool with essential diversity for the improvement of yield and drought resistance.
Malitsky, S. ; Ziv, C. ; Rosenwasser, S. ; Zheng, S. ; Schatz, D. ; Porat, Z. ; Ben-Dor, S. ; Aharoni, A. ; Vardi, A. . Viral Infection Of The Marine Alga Emiliania Huxleyi Triggers Lipidome Remodeling And Induces The Production Of Highly Saturated Triacylglycerol. New PhytologistNew PhytologistNew Phytol 2016, 210, 88 - 96. Publisher's VersionAbstract
Summary Viruses that infect marine photosynthetic microorganisms are major ecological and evolutionary drivers of microbial food webs, estimated to turn over more than a quarter of the total photosynthetically fixed carbon. Viral infection of the bloom-forming microalga Emiliania huxleyi induces the rapid remodeling of host primary metabolism, targeted towards fatty acid metabolism. We applied a liquid chromatography-mass spectrometry (LC-MS)-based lipidomics approach combined with imaging flow cytometry and gene expression profiling to explore the impact of viral-induced metabolic reprogramming on lipid composition. Lytic viral infection led to remodeling of the cellular lipidome, by predominantly inducing the biosynthesis of highly saturated triacylglycerols (TAGs), coupled with a significant accumulation of neutral lipids within lipid droplets. Furthermore, TAGs were found to be a major component (77%) of the lipidome of isolated virions. Interestingly, viral-induced TAGs were significantly more saturated than TAGs produced under nitrogen starvation. This study highlights TAGs as major products of the viral-induced metabolic reprogramming during the host?virus interaction and indicates a selective mode of membrane recruitment during viral assembly, possibly by budding of the virus from specialized subcellular compartments. These findings provide novel insights into the role of viruses infecting microalgae in regulating metabolism and energy transfer in the marine environment and suggest their possible biotechnological application in biofuel production.
Sheyn, U. ; Rosenwasser, S. ; Ben-Dor, S. ; Porat, Z. ; Vardi, A. . Modulation Of Host Ros Metabolism Is Essential For Viral Infection Of A Bloom-Forming Coccolithophore In The Ocean. 2016, 10, 1742 - 1754. Publisher's VersionAbstract
The cosmopolitan coccolithophore Emiliania huxleyi is a unicellular eukaryotic alga responsible for vast blooms in the ocean. These blooms have immense impact on large biogeochemical cycles and are terminated by a specific large double-stranded DNA E. huxleyi virus (EhV, Phycodnaviridae). EhV infection is accompanied by induction of hallmarks of programmed cell death and production of reactive oxygen species (ROS). Here we characterized alterations in ROS metabolism and explored its role during infection. Transcriptomic analysis of ROS-related genes predicted an increase in glutathione (GSH) and H2O2 production during infection. In accordance, using biochemical assays and specific fluorescent probes we demonstrated the overproduction of GSH during lytic infection. We also showed that H2O2 production, rather than superoxide, is the predominant ROS during the onset of the lytic phase of infection. Using flow cytometry, confocal microscopy and multispectral imaging flow cytometry, we showed that the profound co-production of H2O2 and GSH occurred in the same subpopulation of cells but at different subcellular localization. Positively stained cells for GSH and H2O2 were highly infected compared with negatively stained cells. Inhibition of ROS production by application of a peroxidase inhibitor or an H2O2 scavenger inhibited host cell death and reduced viral production. We conclude that viral infection induced remodeling of the host antioxidant network that is essential for a successful viral replication cycle. This study provides insight into viral replication strategy and suggests the use of specific cellular markers to identify and quantify the extent of active viral infection during E. huxleyi blooms in the ocean.
Bratt, A. ; Rosenwasser, S. ; Meyer, A. ; Fluhr, R. . Organelle Redox Autonomy During Environmental Stress. Plant, Cell & EnvironmentPlant, Cell & EnvironmentPlant, Cell & Environment 2016, 39, 1909 - 1919. Publisher's VersionAbstract
Abstract Oxidative stress is generated in plants because of inequalities in the rate of reactive oxygen species (ROS) generation and scavenging. The subcellular redox state under various stress conditions was assessed using the redox reporter roGFP2 targeted to chloroplastic, mitochondrial, peroxisomal and cytosolic compartments. In parallel, the vitality of the plant was measured by ion leakage. Our results revealed that during certain physiological stress conditions the changes in roGFP2 oxidation are comparable to application of high concentrations of exogenous H2O2. Under each stress, particular organelles were affected. Conditions of extended dark stress, or application of elicitor, impacted chiefly on the status of peroxisomal redox state. In contrast, conditions of drought or high light altered the status of mitochondrial or chloroplast redox state, respectively. Amalgamation of the results from diverse environmental stresses shows cases of organelle autonomy as well as multi-organelle oxidative change. Importantly, organelle-specific oxidation under several stresses proceeded cell death as measured by ion leakage, suggesting early roGFP oxidation as predictive of cell death. The measurement of redox state in multiple compartments enables one to look at redox state connectivity between organelles in relation to oxidative stress as well as assign a redox fingerprint to various types of stress conditions.
Rosenwasser, S. ; Ziv, C. ; Graff van Creveld, S. ; Vardi, A. . Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions In The Ocean. 2016, 24, 821 - 832. Publisher's VersionAbstract
Marine viruses are considered to be major ecological, evolutionary, and biogeochemical drivers of the marine environment, responsible for nutrient recycling and determining species composition. Viruses can re-shape their host's metabolic network during infection, generating the virocell–a unique metabolic state that supports their specific requirement. Here we discuss the concept of ‘virocell metabolism’ and its formation by rewiring of host-encoded metabolic networks, or by introducing virus-encoded auxiliary metabolic genes which provide the virocell with novel metabolic capabilities. The ecological role of marine viruses is commonly assessed by their relative abundance and phylogenetic diversity, lacking the ability to assess the dynamics of active viral infection. The new ability to define a unique metabolic state of the virocell will expand the current virion-centric approaches in order to quantify the impact of marine viruses on microbial food webs.